- A new symbiotic, holistic and gradualist model proposal for the concept of “living organism”
- Mathematical model of tumor immune microenvironment with application to the combined therapy targeting the PD-1/PD-L1 pathway and IL-10 cytokine antibody
- Revisiting institutional punishment in the N-person prisoner’s dilemma
- Hypothesis: bacteria live on the edge of phase transitions with a cell cycle regulated by a water-clock
- Do concepts of individuality account for individuation practices in studies of host–parasite systems? A modeling account of biological individuality
- Spaces of mathematical chemistry
- Eco-evolutionary dynamics of structured populations in periodically fluctuating environments: a G function approach
- A life dedicated to research and ideal: Johannes Müller between empirical universality and idealistic vitalism mirrored in lecture notes from 1851
- Postmortem communication
- 2-Site versus 3-site models of ATP hydrolysis by F1-ATPase: definitive mathematical proof using combinatorics and conservation equations
- Rethinking life and predicting its origin
- Application of network pharmacology in synergistic action of Chinese herbal compounds
- Prioritizing cervical cancer candidate genes using chaos game and fractal-based time series approach
- The bubble theory: exploring the transition from first replicators to cells and viruses in a landscape-based scenario
- Rethinking some roots of ecosystem approach in aquatic ecology: between the food cycle and lake metabolism
- Mathematical analysis of a modified Volterra-Leslie chemostat Model
- Dynamics of neural fields with exponential temporal kernel
- Behavioral selection in structured populations
- Optimal dispersal and diffusion-enhanced robustness in two-patch metapopulations: origin’s saddle-source nature matters
- Modeling stress-induced responses: plasticity in continuous state space and gradual clonal evolution
- Speciation, natural selection, and networks: three historians versus theoretical population geneticists
- Thomas S. Kuhn: key to a better understanding of the extended evolutionary synthesis
- Normalizing need not be the norm: count-based math for analyzing single-cell data
- On a population model with density dependence and Allee effect
- Matrix stability and bifurcation analysis by a network-based approach
- Evolution by habit: Peirce, Lamarck, and teleology in biology
- Myths of past biases and progress in biology
- A biosemiotic interpretation of certain genital morphological structures in the spiders Dysdera erythrina and Dysdera crocata (Araneae: Dysderidae)
- MLACNN: an attention mechanism-based CNN architecture for predicting genome-wide DNA methylation
- Clustering systems of phylogenetic networks
- The emergence of dynamic networks from many coupled polar oscillators: a paradigm for artificial life
- Investigation of memory influences on bio-heat responses of skin tissue due to various thermal conditions
- An epidemic dynamics model with limited isolation capacity
- Stability of a diffusive-delayed HCV infection model with general cell-to-cell incidence function incorporating immune response and cell proliferation
- Growth modeling approach with the Verhulst coexistence dynamic properties for regulation purposes
- Symmetrical distributions of aminoacyl-tRNA synthetases during the evolution of the genetic code
- Self-similarity and the maximum entropy principle in the genetic code
- Kin term mimicry hypothesis
- Stationary distribution and density function analysis of SVIS epidemic model with saturated incidence and vaccination under stochastic environments
- A biological and a mathematical model of SLE treated by mesenchymal stem cells covering all the stages of the disease
- A computational investigation of cis-gene regulation in evolution
- Hypothesis: functional age and onset of autosomal dominant genetic prion disease
- Path integral control of a stochastic multi-risk SIR pandemic model
- Evolutionary honing in and mutational replacement: how long-term directed mutational responses to specific environmental pressures are possible
- Wartime forced sex as a male mating strategy
- Biology as involving laws and inconceivable without them
- Descriptive versus causal morphology: gynandromorphism and intersexuality
- Molecular characterization of chilli leaf curl Ahmedabad virus: homology modelling and evaluation of viral proteins interacting with host protein SnRK1 and docking against flavonoids—an in silico approach
- Formal verification confirms the role of p53 protein in cell fate decision mechanism
- Radioresistance and radiosensitivity: a biophysical approach on bacterial cells robustness
- An almost periodic model to describe phenology mismatches in mutualistic interactions
- Modeling the stochastic within-host dynamics SARS-CoV-2 infection with discrete delay
- The shadow of “the Eclipse of Darwinism”: the problem of evolutionary mechanisms in Republican China, 1910s–1930s
- Prebiotic chemical refugia: multifaceted scenario for the formation of biomolecules in primitive Earth
- Phenotypic plasticity in plasmodial slime molds and molecular phylogeny of terrestrial vs. aquatic species
- Goethe and Candolle: National forms of scientific writing?
- Growth dynamics of breast cancer stem cells: effects of self-feedback and EMT mechanisms
- First principles of terrestrial life: exemplars for potential extra-terrestrial biology
- Thermodynamic principles for system biology and the patterns of flower pigmentation
- Mathematical modeling for mutator phenotype and clonal selection advantage in the risk analysis of lung cancer
- The historical nature of biological complexity and the ineffectiveness of the mathematical approach to it
- Mathematics of life spaces: continuation of the 2018 large dimensions course
- Network representation and analysis of energy coupling mechanisms in cellular metabolism by a graph-theoretical approach
- A reappraisal of the form: function problem—theory and phenomenology
- How much biology is in the product? Role and relevance of biological evolution and function for bio-inspired design
- Geometry and phenomenology of the living: Limits and possibilities of mathematization, complexity and individuation in biological sciences
- Pattern formation features might explain homoplasy: fertile surfaces in higher fungi as an example
- Delay induced interaction of humoral- and cell-mediated immune responses with cancer
- A mathematical model for viscoelastic properties of biological soft tissue
- Is DNA repair controlled by a biological logic circuit?
- Introduction to the special issue: quantifying collectivity
- Innovations are disproportionately likely in the periphery of a scientific network
- Information transmission in a two-step cascade: interplay of activation and repression
- Correction to: The biological Maxwell’s demons: exploring ideas about the information processing in biological systems
- Methodological notes on pandemic virus SARS-CoV-2 research
- The biological Maxwell’s demons: exploring ideas about the information processing in biological systems
- Geometry and symmetry in biochemical reaction systems
- Flow analysis of Carreau fluid model induced by the ciliary cells, smooth muscle cells and pressure gradient at the ampullar region entrance
- Second-order division in sectors as a prepattern for sensory organs in vertebrate development
- Biology, geometry and information
- Complexities in viral replication strategies as a potential explanation for prevalence of asymptomatic carriers in Covid-19 infections: analytical observation on SARS-Cov2 genome characteristics
- The limits of the mathematization of the living and the idea of formal morphology of the living world following Husserlian phenomenology
- Consciousness, decision making, and volition: freedom beyond chance and necessity
- Optimal harvesting and stability of a predator–prey model for fish populations with schooling behavior
- Effects of water currents on fish migration through a Feynman-type path integral approach under $$sqrt{8/3}$$ 8 / 3 Liouville-like quantum gravity surfaces
- Nutrient supply, cell spatial correlation and Gompertzian tumor growth
- The essence of life revisited: how theories can shed light on it
- Optimal allocation in annual plants with density-dependent fitness
- A reaction norm perspective on reproducibility
- On the historical roots of creationism and intelligent design: German Allmacht and Darwinian evolution in context
- Role of integrated noise in pathway-specific signal propagation in feed-forward loops
- Mathematical computations on epidemiology: a case study of the novel coronavirus (SARS-CoV-2)
- Quantifying the impact of network structure on speed and accuracy in collective decision-making
- Mathematical modeling and analysis of anemia during pregnancy and postpartum
- Informational architecture across non-living and living collectives
- Equivalence classes of circular codes induced by permutation groups
- Are topological explanations really free of mechanisms?
- On biological individuation
- Ingredients for robustness
- Quantifying simultaneous innovations in evolutionary medicine
- Are spliced ncRNA host genes distinct classes of lncRNAs?
- Edge-based analysis of networks: curvatures of graphs and hypergraphs
- Biological information
- Scientific traditions in conflict: the Rusconi–von Baer controversy on the embryology of frogs and the development of the cell theory
- Modelling and optimal control for Chikungunya disease
- “Cladus” and clade: a taxonomic odyssey
- Hypothesis: nucleoid-associated proteins segregate with a parental DNA strand to generate coherent phenotypic diversity
- Aristotle’s lobster: the image in the text
- Two-species competing population dynamics with the population-dependent environmental capacities under random disturbance
- Historicity at the heart of biology
- A mechanistic model of metabolic symbioses in microbes recapitulates experimental data and identifies a continuum of symbiotic interactions
- Factorization of joint metacommunity diversity into its marginal components: an alternative to the partitioning of trait diversity
- Mathematical assessment of the spermatozoa transport through couple stress fluid in an asymmetric human cervical canal
- On the problem of biological form
- A study on the stability behavior of an epidemic model with ratio-dependent incidence and saturated treatment
- The information theory of individuality
- Searching for structure in collective systems
- Hominid sexual nature
- Gene-mating dynamic evolution theory II: global stability of N-gender-mating polyploid systems
- Correction to: From nest site lottery to host lottery: continuous model of growth suppression driven by the availability of nest sites for newborns or hosts for parasites and its impact on the selection of life history strategies
- Gene-mating dynamic evolution theory: fundamental assumptions, exactly solvable models and analytic solutions
- From nest site lottery to host lottery
- Connected pretopology in recombination space
- Acute hepatitis B virus infection model within the host incorporating immune cells and cytokine responses
- When few survive to tell the tale: thymus and gonad as auditioning organs: historical overview
- Measuring collective behavior: an ecological approach
- Information theory unveils the evolution of tRNA identity elements in the three domains of life
- Tempos and modes of collectivity in the history of life
- A deterministic time-delayed SIR epidemic model: mathematical modeling and analysis
- Dynamics of a non-smooth epidemic model with three thresholds
- Self-organization of self-clearing beating patterns in an array of locally interacting ciliated cells formulated as an adaptive Boolean network
- Bifurcation analysis in a delay model of IVGTT glucose–insulin interaction
- Average Fitness Differences on NK Landscapes
- Do cells use passwords in cell-state transitions? Is cell signaling sometimes encrypted?
- Evolutionary transitions in heritability and individuality
- A stochastic differential game approach toward animal migration
- Fixation properties of multiple cooperator configurations on regular graphs
- Stability and dynamics of a fractional-order three-species predator–prey model
- Haeckel and du Bois-Reymond: rival German Darwinists
- Ernst Haeckel’s contribution to Evo-Devo and scientific debate: a re-evaluation of Haeckel’s controversial illustrations in US textbooks in response to creationist accusations
- Evolutionary ethics and Haeckelian monism: the case of Heinrich Schmidt’s Harmonie (1931)
- The break-up between Darwin and Haeckel
- Russian editions of E. Haeckel’s works and the evolution of their perception
- Ernst Haeckel and the philosophy of sponges
- Ernst Haeckel’s “ecology” in Russia of the first half of the twentieth century
- Art Forms in Nature: radiolaria from Haeckel and Blaschka to 3D nanotomography, quantitative image analysis, evolution, and contemporary art
- The reception of Haeckel in pre-revolutionary Russia and his impact on evolutionary theory
- Plasmodial slime molds and the evolution of microbial husbandry
- The concept of the ‘organic individual’ in Haeckel’s writings
- The Haeckel reception in Sweden
- Ernst Haeckel (1834–1919): The German Darwin and his impact on modern biology
- Ernst Haeckel’s embryology in biology textbooks in the German Democratic Republic, 1951–1988
- A mathematical solution to Peto’s paradox using Polya’s urn model: implications for the aetiology of cancer in general
- Mathematical modeling of dengue epidemic: control methods and vaccination strategies
- The effect of ramet mortality on clonal plant growth
- A mathematical and numerical study of a SIR epidemic model with time delay, nonlinear incidence and treatment rates
- Mathematics of a model for Zika transmission dynamics
- Seasonal transmission dynamics of measles in China
- Correction to: Some theoretical insights into the hologenome theory of evolution and the role of microbes in speciation
- The emerging structure of the Extended Evolutionary Synthesis: where does Evo-Devo fit in?
- Some theoretical insights into the hologenome theory of evolution and the role of microbes in speciation
- Bioenergetics of life, disease and death phenomena
- Tetz’s theory and law of longevity
- Phylogenetics beyond biology
- Systems biology of eukaryotic superorganisms and the holobiont concept
- An optimal stopping approach for onset of fish migration
- Georgy Gause’s shift from ecology and evolutionary biology to antibiotics research: reasons, objectives, circumstances
- Mathematical modeling of cancer–immune system, considering the role of antibodies
- Self-complementary circular codes in coding theory
- The evolutionary origin of chordate segmentation: revisiting the enterocoel theory
- Interaction rates, vital rates, background fitness and replicator dynamics: how to embed evolutionary game structure into realistic population dynamics
- Bijective codon transformations show genetic code symmetries centered on cytosine’s coding properties
- Process analysis of carcinogenesis: concept derivation of the tissue function “preservation of a homogeneous gene expression”
- Addition to “Special Issue in Commemoration of Olaf Breidbach-Part II”
- On the global stability of an epidemic model of computer viruses
- Diversity and survival of artificial lifeforms under sedimentation and random motion
- Vigor of survival determinism: subtle evolutionary gradualism interspersed with robust phylogenetic leaping
- Autopolyploidy leads to rapid genomic changes in Arabidopsis thaliana
- Correlates and catalysts of hominin evolution in Africa
- Efficient modelling of foliage distribution and crown dynamics in monolayer tree species
- Relations and dependencies between morphological characters
- Introduction to the second special issue in commemoration of Olaf Breidbach
- An objective view of biological diversity: how history and epistemology shaped current treatment
- Arbitrariness is not enough: towards a functional approach to the genetic code
- A simple game-theoretic model for upstream fish migration
- Knowledge
- The “Biogenetic Law” in zoology: from Ernst Haeckel’s formulation to current approaches
- The invariance of production per unit of food consumed in fish populations
- The hologenome concept: we need to incorporate function
- Optimal control therapy and vaccination for special HIV-1 model with delay
- Behavioural plasticity in evolving robots
- Design specifications for cellular regulation
- On discrete evolutionary dynamics driven by quadratic interactions
- Beyond borders: on the influence of the creationist movement on the educational landscape in the USA and Russia
- From Goethe’s plant archetype via Haeckel’s biogenetic law to plant evo-devo 2016
- Armin von Tschermak-Seysenegg (1870–1952): Physiologist and Co-‘Rediscoverer’ of Mendel’s laws
- Influence of network topology on cooperative problem-solving systems
- The evolution of the plant genome-to-morphology auxin circuit
- Diploid male dynamics under different numbers of sexual alleles and male dispersal abilities
- Analytic derivation of bacterial growth laws from a simple model of intracellular chemical dynamics
- Scaffolded biology
- Defining and simulating open-ended novelty: requirements, guidelines, and challenges
- Introduction to the special issue in commemoration of Olaf Breidbach
- Dynamic analysis of a fractional order delayed predator–prey system with harvesting
- Location and foraging as basis for classification of biotic interactions